Package: biotools 4.2

Anderson Rodrigo da Silva

biotools: Tools for Biometry and Applied Statistics in Agricultural Science

Tools designed to perform and evaluate cluster analysis (including Tocher's algorithm), discriminant analysis and path analysis (standard and under collinearity), as well as some useful miscellaneous tools for dealing with sample size and optimum plot size calculations. A test for seed sample heterogeneity is now available. Mantel's permutation test can be found in this package. A new approach for calculating its power is implemented. biotools also contains tests for genetic covariance components. Heuristic approaches for performing non-parametric spatial predictions of generic response variables and spatial gene diversity are implemented.

Authors:Anderson Rodrigo da Silva [aut, cre]

biotools_4.2.tar.gz
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biotools_4.2.tgz(r-4.4-any)biotools_4.2.tgz(r-4.3-any)
biotools_4.2.tar.gz(r-4.5-noble)biotools_4.2.tar.gz(r-4.4-noble)
biotools_4.2.tgz(r-4.4-emscripten)biotools_4.2.tgz(r-4.3-emscripten)
biotools.pdf |biotools.html✨
biotools/json (API)
NEWS

# Install 'biotools' in R:
install.packages('biotools', repos = c('https://arsilva87.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/arsilva87/biotools/issues

Datasets:

On CRAN:

cluster-analysismultivariate-analysisstatisticstocher

25 exports 2 stars 3.53 score 2 dependencies 1 dependents 21 mentions 144 scripts 1.5k downloads

Last updated 3 years agofrom:85dbdd648b. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 04 2024
R-4.5-winERRORSep 04 2024
R-4.5-linuxERRORSep 04 2024
R-4.4-winERRORSep 04 2024
R-4.4-macERRORSep 04 2024
R-4.3-winERRORSep 04 2024
R-4.3-macERRORSep 04 2024

Exports:aerboxMconfusionmatrixcoph.tochercov2pcovcreategroupsD2.discD2.distdistClustfindSubsamplefitplotsizegencovtestgerminationcount.testmantelPowermantelTestmultcor.testmvpaircompoptimumplotsizepathanalysisraise.matrixsamplesizesHesinghspatialpredtocher

Dependencies:bootMASS

biotools: an overview

Anderson R da Silva

Rendered fromoverview.Rmdusingknitr::rmarkdownon Sep 04 2024.

Last update: 2021-08-07
Started: 2021-08-07

Readme and manuals

Help Manual

Help pageTopics
Tools for Biometry and Applied Statistics in Agricultural Sciencebiotools-package biotools
Apparent Error Rateaer
Box's M-testboxM
Brazil Gridbrazil
Confusion Matrixconfusionmatrix
Partial Covariance Matrixcov2pcov
Creating Homogeneous Groupscreategroups
Discriminant Analysis Based on Mahalanobis DistanceD2.disc D2.disc.default predict.D2.disc print.D2.disc
Pairwise Squared Generalized Mahalanobis DistancesD2.dist
Cluster Distance MatrixdistClust
Finding an Optimized SubsamplefindSubsample
Parameter Estimation of the Plot Size Modelfitplotsize
Distances Between Garlic Cultivarsgarlicdist
Testing Genetic Covariancegencovtest gencovtest.manova plot.gencovtest print.gencovtest
Germination Count Range Test for Seed Sample Heterogeneitygerminationcount.test
Maize Datamaize
Power of Mantel's TestmantelPower
Mantel's Permutation TestmantelTest
Moco Cotton Datamoco
Pairwise Correlation t-Testmultcor.test
Multivariate Pairwise Comparisonsmvpaircomp print.mvpaircomp
Maximum Curvature Point for Optimum Plot Sizeoptimumplotsize
Path Analysis, Simple and Under Collinearitypathanalysis
Correlations Between Pepper Variablespeppercorr
Raising a Square Matrix to a Powerraise.matrix
Minimum Sample Sizesamplesize
Spatial Analysis of Gene DiversitysHe
Importance of Variables According to the Singh (1981) Criterionplot.singh singh singh.default
Spatial Predictions Based on the Circular Variable-Radius Moving Window Methodspatialpred
Tocher's Clusteringcoph.tocher cophenetic.tocher print.tocher tocher tocher.dist